/**
 * PHOSIDE: PHosphorylation Site IDentification Engine.
 * Copyright 2009 Digital Biology Lab, University of Missouri.
 * This library is free software; you can redistribute it and/or modify it under
 * the terms of the GNU General Public License as published by the Free Software
 * Foundation; either version 3 of the License, or (at your option) any later
 * version. <p/> This library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the License for more
 * details.
 */

package phoside.ui.task;

import phoside.io.ProteinsReader;


/**
 *
 */
public class ProteinsReadTask extends AbstractTask {
    private final ProteinsReader reader;
    
    public ProteinsReadTask(final ProteinsReader reader) {
            super("Proteins reading");
            this.reader = reader;
    }

    /**
     * Executes Task.
     */
    //@Override
    public void run() {
            try {
                    taskMonitor.setPercentCompleted(-1);
                    
                    taskMonitor.setStatus("reading.");
                    reader.read();

                    taskMonitor.setPercentCompleted(100);
                    taskMonitor.setStatus("read.");

                    success = true;
            } catch (Exception e) {
                    taskMonitor.setPercentCompleted(100);
                    taskMonitor.setStatus("Failed to read.\n"+e.getMessage());
                    e.printStackTrace();
                    return;
            }
    }
}
